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Showing papers from University of Ottawa Show all papers

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The Cost of Absolute Position: A Spread-Expressivity Tradeoff for Additive Positional Encodings

Noah Mitchell, Isaac Gabriel, Alexander Wyatt

Atlanta Poster Session 4, Thu, Dec 10, 4:30 PM–7:30 PM, Hall C1 · Published 2026

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91%Must read
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Plausibility Is Not Prediction: Contrastive Evidence for LLM-Based Cellular Perturbation Reasoning

LLM-based cellular perturbation reasoning relies on intrinsic gene tendencies rather than true perturbation effects, and contrastive evidence organization improves prediction accuracy substantially.

XINYU YUAN, Xixian Liu, Jianan Zhao, Ya Shi Zhang and 2 more

Sydney Poster Session 1, Tue, Dec 8, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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AI panel: 17 of 20 reviewers recommend it
lenient 5/5
medium 9/10
strict 3/5
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GeneZip: Region-Aware Compression for Long Context DNA Modeling

GeneZip uses region-aware compression to achieve high base-pairs-per-token ratios, improves DNA modeling benchmarks, and enables 128K-context training on limited hardware.

Jianan Zhao, Xixian Liu, Zhihao Zhan, XINYU YUAN and 2 more

Sydney Poster Session 6, Thu, Dec 10, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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AI panel: 17 of 20 reviewers recommend it
lenient 5/5
medium 10/10
strict 2/5