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Showing Genomics & single-cell Show all papers

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PreprintU ZurichU PalermoUniversitat Pompeu FabraInstitut de Biologia EvolutivaBarcelona School of EconomicsGenomics & single-cell

Agta hunter-gatherer oral microbiomes are shaped by contact network structure

Agta hunter-gatherer oral microbiomes resemble Central African foragers more than neighbors, with contact networks predicting bacterial transmission and central individuals as supersharers.

Federico Musciotto, Begoña Dobón, Michael John Greenacre, Álex Mira and 12 more

Published Dec 31, 2030 · 0 citations

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NeurIPS 2026SichuanCollege of Computer Science, SicGenomics & single-cell

scMAF: Single-Cell Multi-Omics Clustering via Adaptive Modality Fusion

Jun Fu, Yiding Lu, Ruohong Yang, Xi Peng and 1 more

Sydney Poster Session 4, Wed, Dec 9, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026FudanGenomics & single-cell

Causally Structured Differential Network Modeling for Single-Cell Perturbation Prediction

Jiayi Dong, Xinyue Gu, Fei Wang

Sydney Poster Session 2, Tue, Dec 8, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026U Electronic Science and TechnolAlpaca AI LabGroup 42Sichuan AgriculturalSouthwest JiaotongGenomics & single-cell

Layout Before Pixels: Topology-Anchored Transcriptome-to-Histology Generation

Jianwei Zhao, Xin Li, Fan Yang, Qiang Zhai and 2 more

Sydney Poster Session 1, Tue, Dec 8, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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67%Highly rated
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NeurIPS 2026Scienta LabMines ParisNeuralk AIGenomics & single-cell

When Transcriptomic Foundation Models Scale: Domain-Focused Pretraining for Drug Development in Immunology and Inflammation

Karim El Kanbi, Yannis Cattan, Aziz Fouché, Charlotte Claye and 2 more

Sydney Poster Session 5, Thu, Dec 10, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026SUN YAT-SEN UNIVERSITYTencent AI for Life Sciences LabTencentTsinghua University, TsinghuaThe Hong Kong University of ScieGenomics & single-cell

WaveSem: Frequency-Adaptive Tokenization for Disentangling Semantics and Noise in Genomics

Shou Z Chen, Bing He, Zhenchao Tang, Jun Zhu and 8 more

Sydney Poster Session 5, Thu, Dec 10, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026SpotlightNew YorkLabs For HumanityGenomics & single-cell

Deep Generative Models for Phylogenetic Inference with Complex Evolutionary Processes

Ethan Baron, Alan Amin, Andrew Wilson

Sydney Poster Session 5, Thu, Dec 10, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026DukeDuke University / KAUSTGenomics & single-cell

Learning Biological Hierarchies in Single-Cell Foundation Models

Xiangyu Guo, Ricardo Henao

Atlanta Poster Session 2, Wed, Dec 9, 4:30 PM–7:30 PM, Hall C1 · Published 2026

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NeurIPS 2026U Missouri ColumbiaU Missouri - ColumbiaU MissouriGenomics & single-cell

GRNAgent: A Multimodal Graph Reasoning Agent for Gene Regulatory Network Inference

Akshata Hegde, Kyler Zook, Yanli Wang, Jianlin Cheng

Atlanta Poster Session 3, Thu, Dec 10, 10:00 AM–1:00 PM, Hall C1 · Published 2026

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NeurIPS 2026CMU, Carnegie MellonCMU & MBZUAIGenomics & single-cell

Identifiable Feedback-Controlled Latent Flow for Unpaired Single-cell Spatio-Temporal Dynamics

Jianle Sun, Kun Zhang

Sydney Poster Session 2, Tue, Dec 8, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026Texas A&MTexas A&M University - ColleGenomics & single-cell

PerturbReason: A Knowledge-Grounded Benchmark and Framework for Cell-State–Conditioned Mechanistic Reasoning of Perturbation Effects

Dongkwan Kim, Yiming Gao, Yining Yang, Yang Shen

Atlanta Poster Session 6, Fri, Dec 11, 4:30 PM–7:30 PM, Hall C1 · Published 2026

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NeurIPS 2026PurdueCytognosis FoundationGenomics & single-cell

Spectral Adaptive Repositioning for Flow-Based Single-Cell Perturbation Modeling

Shourya Verma, Mengbo Wang, Simran Kadadi, Shahin Mohammadi and 2 more

Sydney Poster Session 6, Thu, Dec 10, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026The University of ManchesterU ManchesterGenomics & single-cell

Benchmarks Design under Data Scarcity: From Coarse Labels to Diagnostic Evaluation of Biosynthetic Gene Cluster Models

Hanlin Xiao, Eriko Takano, Mauricio A Álvarez, Rainer Breitling

Sydney Poster Session 3, Wed, Dec 9, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026Weizmann Institute of ScienceGenomics & single-cell

LeCellModel: Interpretable Density Estimation over the Gene Expression Manifold

Gil Karin, Artemy Bakulin, Nir Yosef

Sydney Poster Session 4, Wed, Dec 9, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026Nagoya Institute of Technology /Genomics & single-cell

Adapting Vision Transformers to Organoid Imaging

Yu Takagi

Sydney Poster Session 2, Tue, Dec 8, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026U WarsawUniwersytet Warszawski ul. KrakoCMU, Carnegie MellonMerck Healthcare KGaAHelmholtz Munich GmbHGenomics & single-cell

ImmuVis: Hyperconvolutional Foundation Models for Imaging Mass Cytometry

Dawid Uchal, Marcin Możejko, Krzysztof Gogolewski, Piotr Kupidura and 13 more

Sydney Poster Session 3, Wed, Dec 9, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026KAISTGenentechHITSKorea Advanced Institute of ScieAI-CRED, KAISTGenomics & single-cell

scTrilemma: Balancing Identity, Invariance, and Reconstruction in Single-Cell Representation Learning

Yunhak Oh, Yoonho Lee, Junseok Lee, Namkyeong Lee and 8 more

Sydney Poster Session 5, Thu, Dec 10, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026ETH ZurichETHZ - ETH ZurichInstitute of Science and TechnolHelmholtz AIETHZGenomics & single-cell

Forecasting Microbial Dynamics: Evaluation Protocol and Prior-Spectrum Benchmark

Fedor Sergeev, Anna Győrffy-Kerekes, Tristan Gollmart, Vincent Fortuin and 2 more

Sydney Poster Session 3, Wed, Dec 9, 10:00 AM–1:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026ShanxiGenomics & single-cell

Dynamic Regulatory Graph Learning for Histology-to-Spatial Transcriptomics

Yikai Luo, Peng Zhang, Heyang Zhao, Hongming Shan and 1 more

Sydney Poster Session 2, Tue, Dec 8, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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NeurIPS 2026WestlakeTencent AI LabTencentTencent AI for Life Sciences LabThe Hong Kong University of ScieGenomics & single-cell

UGM: Unified Multi-scale Genomic Event Modeling with Site-level Joint Prediction

Jiayang Wu, Chenchen Qin, Xu YANG, Yu Zhao and 7 more

Sydney Poster Session 2, Tue, Dec 8, 5:00 PM–8:00 PM, Hall 1-4 · Published 2026

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